Satish K Nair
314C Roger Adams Lab
Office: (217) 333-0641
Lab: (217) 333-2688
Fax: (217) 244-5858
Mail to: Department of Biochemistry
417 Roger Adams Lab B-4
600 S Mathews Ave
Urbana, IL 61801
I.C. Gunsalus Endowed Professor
Professor and Head of Biochemistry
Professor of Biophysics and Quantitative Biology
Affiliate, Department of Chemistry
Drug Discovery, Enzymology, Host-Pathogen Interactions, Membrane Biology, Microbial Physiology, Protein Structure
B.S. 1989 Brown University
Ph.D. 1994 University of Pennsylvania
Postdoc. 1995-99 Rockefeller University
Natural products biosynthesis, bacterial signalling, X-ray crystallography
Research in the Nair lab focuses on understanding the basis for regulation of bacteria by small molecule natural products. Our laboratory uses classical biochemical and microbiological techniques, in combination with biophysical methods (in particular X-ray crystallography) to decipher how microbes utilize small molecules to establish ecological niches, and combat against the colonization of antagonistic species that may compete for limited resources. This research focus is predicated upon the notion that knowledge of such interactions drives the discovery and development of natural products that can be used to combat the growth of pathogenic bacteria.
Ribosomally synthesized peptide antibiotics: A main research focus in our laboratory is on biosynthetic enzymes that modify ribosomally encoded peptides to yield macrocyclic natural products. We are specifically focused on understanding the mechanism for the synthesis of two classes of such compounds: lantibiotics and cyanobactins. For both classes of natural products, the genetic nature of the precursor and the modular architecture of the modification/processing enzymes may be exploited to yield novel molecules with improved therapeutic applications. Our work on lantibiotics, in collaboration with the van der Donk laboratory (Chemistry: UIUC), has been aimed at characterization of several enzymes involved in biosynthesis. Our work on cyanobactin, in collaboration with Eric Schmidt (Medicinal Chemistry: Utah) focuses on structure-function characterization of enzymatic pathways for the production of these heterocyclized macrocyclic marine natural products.
Phosphonate biosynthesis and engineering: We are members of the Mining Microbial Genomes theme within the Institute of Genomic Biology (van Der Donk: Chemistry, Metcalf: Microbiology and Zhao: Chemical Engineering). In collaboration with the members of this theme, we are focused on characterization of enzymes involved in the biosynthesis of phosphonate antibiotics, with the aim of using the structural data to reprogram these enzymes to produce novel compounds.
Bacterial inter- and intracellular communication: Bacteria can utilize small molecules as signals and we are focusing on elucidating the mechanisms underlying this process. In quorum sensing, bacteria coordinate population growth by utilizing small molecule inducers (typically acylhomoserine lactones). When the population density exceeds some threshold, these autoinducers bind to their cognate receptor and activate the transcription of various genes. A second class of inter-cellular communication is predicated upon the action of a diffusible signal factors that are chemically distinct from quorum sensing autoinducers. These classes of compounds activate the production or degradation of a second messenger, cyclic diguanylate (or cyclic di-GMP) that act as downstream effectors for various signaling pathways. In theory, as each of these pathways are regulated by small molecules, they represent ideal targets for therapeutic intervention against bacterial growth.
Estrada, P., Morita, M., Hao, Y., Schmidt, E.W.*, and Nair, S.K.* (2018) “A Single Amino Acid Switch Alters the Isoprene Donor Specificity in RiPP Prenyltransferases” J. Am. Chem. Soc. doi: 10.1021/jacs.8b05187.
Ongpipattanakul, C., and Nair, S.K. (2018) “Molecular Basis for Autocatalytic Backbone N-Methyltation in RiPP Natural Product Biosynthesis” ACS Chem. Bio. doi: 10.1021/acschembio.8b00668.
Petronikolou, N. and Nair, S.K. (2018) “Structural and Biochemical Studies of a Biocatalyst for the Enzymatic Production of Wax Esters” ACS Catalysis 8, 6334-44.
An, L., Cogan, D.P., Navo, C.D., Jimenez-Uses, G., Nair, S.K.*, and van der Donk, W.A.* (2018) “Substrate-assisted Enzymatic Formation of Lysinoalanine in Duramycin” Nature Chem. Bio. doi: 10.1038/s41589-018-0122-4.
Cogan, D.P., Hudson, G.A., Zhang, G., Pogorelov, T.V., van der Donk, W.A., Mitchell, D.A., and Nair, S.K. (2017) “Structural insights into enzymatic [4+2] aza-cycloaddition in thiopeptide antibiotic biosynthesis.” Proc. Nat’l Acad. Sci USA. 114, 12928-33.
Chekan, J.R., Estrada, P., Covello, P., and Nair, S.K. (2017) “Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.” Proc. Nat’l Acad. Sci. USA 114, 6551-56.
Estrada, P., Manandhar, M., Dong, S.H., Deveryshetty, J., Agarwal, V., Cronan, J.E., and Nair, S.K. (2017) “Structure and function of the pimeloyl-CoA synthetase BioW defines a new fold for adenylate-forming enzymes.” Nature Chem. Bio. 13, 668-674.
Chekan, J.R., Koos, J.D., Zong, C., Maksimov, M.O., Link, A.J., and Nair, S.K. (2016) "Structure of the Lasso Peptide Isopeptidase Identifies a Topology for Processing Threaded Substrates." J. Am. Chem. Soc. 138, 16452-58.
Hao, Y., Pierce, E., Roe, D., Morita, M., McIntosh, J.A., Agarwal, V., Cheathem, T.E., Schmidt, E.W., and Nair, S.K. (2016) "Molecular basis for the broad substrate selectivity of a peptide prenyltransferase." Proc. Nat’l Acad. Sci. USA 113, 14037-42.
Ortega, M.A., Hao, Y., Zhang, Q., Walke, M.C., van der Donk, W.A., Nair S.K. (2015) "Structure and mechanism of the tRNA-dependent lantibiotic dehydratase NisB." Nature 517, 509-12.